python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_107_b1_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_107_b1_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_157_b1_Lung_PCW10 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_157_b1_Lung_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_226_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_226_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_256_b1_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_256_b1_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_286_b1_Lung_PCW14 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_286_b1_Lung_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b1_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_304_b1_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_381_b1_Lung_PCW15 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_381_b1_Lung_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL20_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_408L_b1_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL24_b1_RNA_lung.barcodes_annotated.T_408L_b1_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_125_b2_Lung_PCW22 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_125_b2_Lung_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_174_b2_Lung_PCW19 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_174_b2_Lung_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_198_b2_Lung_PCW23 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_198_b2_Lung_PCW23.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_24_b2_Lung_PCW17 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_24_b2_Lung_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_304_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_304_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_333_b2_Lung_PCW21 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_333_b2_Lung_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_49_b2_Lung_PCW20 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_49_b2_Lung_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L1-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L2-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L3-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-0-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-1-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-2-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-3-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-4-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-5-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-6-9/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-0/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-1/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-2/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-3/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-4/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-5/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-6/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-7/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL25_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T_77_b2_Lung_PCW18 2 -revcomp | gzip > L4-7-8/SL32_b2_RNA_lung.barcodes_annotated.T_77_b2_Lung_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T108_b3_Kidney_PCW17 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T108_b3_Kidney_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T181_b3_Kidney_PCW19 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T181_b3_Kidney_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T284_b3_Kidney_PCW14 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T284_b3_Kidney_PCW14.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T309_b3_Kidney_PCW21 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T309_b3_Kidney_PCW21.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T373_b3_Kidney_PCW15 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T373_b3_Kidney_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T389_b3_Kidney_PCW13 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T389_b3_Kidney_PCW13.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T65_b3_Kidney_PCW18 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T65_b3_Kidney_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL35_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL37_b3_ATAC_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L1-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L2-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L3-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-0-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-1-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-2-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-3-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-4-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-5-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-6-9/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-0/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-1/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-2/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-3/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-4/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-5/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-6/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-7/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL51_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T359_b3_Kidney_PCW20 2 -revcomp | gzip > L4-7-8/SL53_b3_RNA_kidney.barcodes_annotated.T359_b3_Kidney_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T129_b4_Brain_PCW22.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T129_b4_Brain_PCW22 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T129_b4_Brain_PCW22.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T155_b4_Brain_PCW10.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T155_b4_Brain_PCW10 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T155_b4_Brain_PCW10.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T183_b4_Brain_PCW19.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T183_b4_Brain_PCW19 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T183_b4_Brain_PCW19.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T382_b4_Brain_PCW15.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T382_b4_Brain_PCW15 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T382_b4_Brain_PCW15.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T47_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T47_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T47_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T63_b4_Brain_PCW20.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T63_b4_Brain_PCW20 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T63_b4_Brain_PCW20.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T64_b4_Brain_PCW18.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T64_b4_Brain_PCW18 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T64_b4_Brain_PCW18.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end1.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end1.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL42_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL47_b4_ATAC_brain.barcodes_annotated.T94_b4_Brain_PCW17.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-0-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-1-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-2-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-3-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-4-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-5-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-6-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L1-7-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-0-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-1-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-2-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-3-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-4-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-5-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-6-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L2-7-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-0-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-1-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-2-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-3-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-4-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-5-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-6-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L3-7-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-0-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-1-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-2-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-3-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-4-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-5-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-6-9/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-0/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-1/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-2/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-3/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-4/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-5/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-6/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-7/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL58_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz
python /oak/stanford/groups/akundaje/marinovg/code/single-cell-RNA-seq/SHARE-seq-FASTQ_barcode_subset.py L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.RNA_UMI.end2.fastq.gz 2 barcode_T94_b4_Brain_PCW17 2 -revcomp | gzip > L4-7-8/SL63_b4_RNA_brain.barcodes_annotated.T94_b4_Brain_PCW17.RNA_UMI.end2.fastq.gz